PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 236aa    MW: 25927 Da    PI: 7.8607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25751genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-0685107123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C+k+Fs+   L+ H++ H
  Tp57577_TGAC_v2_mRNA25751  85 YSCQLCNKVFSSIKALNGHMKWH 107
                                99*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-948108No hitNo description
PfamPF139123.4E-105276IPR007087Zinc finger, C2H2
SMARTSM003550.325274IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2245274IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-583108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.92885112IPR007087Zinc finger, C2H2
PfamPF139128.6E-985108IPR007087Zinc finger, C2H2
SMARTSM003550.02385107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MPCSIHLITL TTSTMKKSSS SSSCSSSSSS SPVENDHDHA LANVKQQGSN NHKCDLCNRV  60
FTSGNALGGH KTAHRSHIFP TKKRYSCQLC NKVFSSIKAL NGHMKWHSPK GSNGVVSSSL  120
EQTSNCDGQE TPAIDLSTYL PPILYRTKKR GRKIINDHEA VTPAPILLIN DHEAVTASQI  180
LFDMSHSRVV YRGEFIDFDV DRSAEKRLKL STNVDDTEKL DNVSEIDKPE VNDDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-10C2H2-like zinc finger protein